| Element | Missed Instructions | Cov. | Missed Branches | Cov. | Missed | Cxty | Missed | Lines | Missed | Methods | Missed | Classes |
| Total | 2,485 of 2,610 | 4% | 244 of 254 | 3% | 187 | 195 | 500 | 528 | 62 | 66 | 13 | 14 |
| ChromatogramUtil.java | | 0% | | 0% | 76 | 76 | 219 | 219 | 20 | 20 | 2 | 2 |
| DataPointSorter.java | | 0% | | 0% | 24 | 24 | 49 | 49 | 16 | 16 | 5 | 5 |
| IonTypeUtil.java | | 0% | | 0% | 26 | 26 | 71 | 71 | 4 | 4 | 1 | 1 |
| MsSpectrumUtil.java | | 31% | | 31% | 19 | 27 | 59 | 87 | 7 | 11 | 0 | 1 |
| RawDataFileUtil.java | | 0% | | 0% | 18 | 18 | 38 | 38 | 5 | 5 | 1 | 1 |
| MsScanUtil.java | | 0% | | 0% | 7 | 7 | 28 | 28 | 3 | 3 | 1 | 1 |
| MathUtils.java | | 0% | | 0% | 6 | 6 | 15 | 15 | 2 | 2 | 1 | 1 |
| ArrayUtil.java | | 0% | | 0% | 5 | 5 | 13 | 13 | 3 | 3 | 1 | 1 |
| FeatureTableUtil.java | | 0% | | 0% | 6 | 6 | 8 | 8 | 2 | 2 | 1 | 1 |