| Element | Missed Instructions | Cov. | Missed Branches | Cov. | Missed | Cxty | Missed | Lines | Missed | Methods | Missed | Classes |
| Total | 1,372 of 1,543 | 11% | 95 of 100 | 5% | 206 | 217 | 376 | 421 | 157 | 167 | 10 | 13 |
| SimpleChromatogram.java | | 0% | | 0% | 51 | 51 | 96 | 96 | 24 | 24 | 1 | 1 |
| SimpleFeatureTableRow.java | | 0% | | 0% | 15 | 15 | 33 | 33 | 10 | 10 | 1 | 1 |
| SimpleRawDataFile.java | | 23% | | 0% | 16 | 20 | 34 | 48 | 12 | 16 | 0 | 1 |
| SimpleIonAnnotation.java | | 0% | n/a | 28 | 28 | 41 | 41 | 28 | 28 | 1 | 1 | |
| SimpleMsScan.java | | 28% | | 0% | 23 | 27 | 38 | 51 | 21 | 25 | 0 | 1 |
| AbstractMsSpectrum.java | | 47% | | 20% | 20 | 23 | 20 | 38 | 9 | 11 | 0 | 1 |
| SimpleFeatureTable.java | | 0% | n/a | 7 | 7 | 17 | 17 | 7 | 7 | 1 | 1 | |
| SimpleFeature.java | | 0% | n/a | 19 | 19 | 28 | 28 | 19 | 19 | 1 | 1 | |
| SimpleIsolationInfo.java | | 0% | n/a | 7 | 7 | 21 | 21 | 7 | 7 | 1 | 1 | |
| SimpleIonType.java | | 0% | n/a | 6 | 6 | 15 | 15 | 6 | 6 | 1 | 1 | |
| SimpleSample.java | | 0% | n/a | 8 | 8 | 17 | 17 | 8 | 8 | 1 | 1 | |
| SimpleActivationInfo.java | | 0% | n/a | 4 | 4 | 11 | 11 | 4 | 4 | 1 | 1 | |
| SimpleMsSpectrum.java | | 0% | n/a | 2 | 2 | 5 | 5 | 2 | 2 | 1 | 1 |